Fauna Directory Reference

Directories
directory	Output

Files
file	average.cpp
	Helper functions/classes to aggregate data.
file	breeding_season.cpp
	Determine erbivore breeding season.
file	breeding_season.h [code]
	Determine erbivore breeding season.
file	cohort_population.cpp
	Population class for herbivore cohorts.
file	cohort_population.h [code]
	Population class for herbivore cohorts.
file	create_herbivore_cohort.cpp
	Construct new herbivore cohort objects.
file	create_herbivore_cohort.h [code]
	Construct new herbivore cohort objects.
file	create_herbivore_common.cpp
	Base class for creating herbivore cohorts.
file	create_herbivore_common.h [code]
	Base class for creating herbivore cohorts.
file	date.cpp
	Simple class to hold the date of a simulation day.
file	date_interval.cpp
	Two dates framing a time interval.
file	date_interval.h [code]
	Two dates framing a time interval.
file	expenditure_components.cpp
	Different models to calculate energy expenditures of herbivores.
file	expenditure_components.h [code]
	Different models to calculate energy expenditures of herbivores.
file	fatmass_energy_budget.cpp
	Herbivore energy model with fat reserves and anabolism/catabolism.
file	fatmass_energy_budget.h [code]
	Herbivore energy model with fat reserves and anabolism/catabolism.
file	feed_herbivores.cpp
	Function object to feed herbivores.
file	feed_herbivores.h [code]
	Function object to feed herbivores.
file	fileystem.cpp
	Interaction with the filesystem on Unix and Windows platforms.
file	fileystem.h [code]
	Interaction with the filesystem on Unix and Windows platforms.
file	forage_base.cpp
	Base class for all forage types.
file	forage_distribution_algorithms.cpp
	Different models how to distribute available forage among herbivores.
file	forage_distribution_algorithms.h [code]
	Different models how to distribute available forage among herbivores.
file	forage_types.cpp
	Definition of forage types (grass, browse, etc.)
file	forage_values.cpp
	Basic classes encapsulating forage amounts & fractions.
file	foraging_limits.cpp
	Different models how to restrict daily forage intake of herbivores.
file	foraging_limits.h [code]
	Different models how to restrict daily forage intake of herbivores.
file	get_forage_demands.cpp
	Helper class to determine how much an herbivore wants to eat.
file	get_forage_demands.h [code]
	Helper class to determine how much an herbivore wants to eat.
file	grass_forage.cpp
	The forage class for grass.
file	habitat.cpp
	The spatial unit where herbivores live in.
file	habitat_forage.cpp
	Forage in a habitat.
file	herbivore_base.cpp
	A versatile base class to derive herbivores from.
file	herbivore_base.h [code]
	A versatile base class to derive herbivores from.
file	herbivore_cohort.cpp
	Implementation of Fauna::HerbivoreBase as annual cohorts.
file	herbivore_cohort.h [code]
	Implementation of Fauna::HerbivoreBase as annual cohorts.
file	herbivore_interface.h [code]
	Pure abstract class to derive any kind of herbivore from.
file	herbivore_vector.h [code]
	Type definitions of vectors of herbivore pointers.
file	hft.cpp
	Herbivore Functional Type (HFT) class and its dependents.
file	hft.h [code]
	Herbivore Functional Type (HFT) class and its dependents.
file	insfile_reader.cpp
	Read the instruction file with HFTs and global parameters.
file	insfile_reader.h [code]
	Read the instruction file with HFTs and global parameters.
file	mortality_factors.cpp
	Different implementations for how herbivores die.
file	mortality_factors.h [code]
	Different implementations for how herbivores die.
file	net_energy_models.cpp
	Energy content of herbivore forage.
file	net_energy_models.h [code]
	Energy content of herbivore forage.
file	parameters.cpp
	Global parameters for the megafauna library.
file	parameters.h [code]
	Global parameters for the megafauna library.
file	population_interface.cpp
	Abstract class for any population of herbivores.
file	population_interface.h [code]
	Abstract class for any population of herbivores.
file	population_list.h [code]
	A list of herbivore populations in a habitat.
file	reproduction_models.cpp
	Different implementations to calculate reproduction of herbivores.
file	reproduction_models.h [code]
	Different implementations to calculate reproduction of herbivores.
file	simulate_day.cpp
	Function object to perform simulations in the herbivore model.
file	simulate_day.h [code]
	Function object to perform simulations in the herbivore model.
file	simulation_unit.cpp
	Simulation unit: a habitat + herbivore populations.
file	simulation_unit.h [code]
	Simulation unit: a habitat + herbivore populations.
file	world.cpp
	Central management of all herbivores and habitats.
file	world_constructor.cpp
	Create objects for the Fauna::World class.
file	world_constructor.h [code]
	Create objects for the Fauna::World class.